His seminal work:
An Alarme to Unconverted Sinners
(London, 1672)

His other works

• A Call to Archippus, [London: s.n.], 1664
• An Alarme to Unconverted Sinners, London, 1672
• Divers Practical Cases of conscience, Satisfactorily Resolved, London, 1672
• A Most Familiar Explanation of the Assemblies Shorter Catechism, London, 1672
• Mr. Joseph Alleines Directions, for Covenanting vvith God, London, 1674
• Remaines, London, 1674
• The True Way to Happiness, London, 1675
• A Sure Guide to Heaven: or An Earnest Invitation to Sinners to Turn to God, London, 1688
• Hyfforddwr Cyfarwydd I’r Nefoedd, London, 1693
• Christian Letters Full of Spiritual Instructions, London, [1700?]
• Mr. Joseph Alleine’s Rules for Self-Examination, Boston, [174-?]
• The Saint’s Pocket-Book, Glasgow, 1742
• The Works of the Truly Pious and Learned Mr Joseph Allan, Edinburgh, 1752
• Useful Questions, Whereby a Person may Examine himself Every Day, Philadelphia, 1753
• The Shorter Catechism Agreed Upon by the Reverend Assembly of Divines at Westminster. To Which is Added, Some Serious Questions very Proper for True Christians to Ask Themselves Every Day, by the Late Reverend Mr.Joseph Allaine. Also a Cradle Hymn, by the Reverend Dr. Isaac Watts, New-London, 1754
• The Voice of God in His Promises, London, 1766
• The Believer’s Triumph in God’s Promises, London, 1767
• A Remedy of God’s Own Providing for a Sinner’s Guilty Conscience, [London?, 1770?]
• An Admonition to Unconverted Sinners, (London, 1771)
• Earail Shurachdach Do Pheacaich Neo-Iompaichte, Dunedin, 1781
• An Abridgement of Alleine’s Alarm to Unconverted Sinners, London, 1783
• Joseph Alleins Grundlegung zum thatigen Christenthum, Lancaster, 1797
• An Earnest Invitation to the Reader to Turn to God, Grantham, 1799

(List taken from Wiki. To be updated in due course.)

Many can be read here.

‘An Alarme to the Unconverted’ remains in print to this day, under a variety of titles, such as….